If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ), 'gf_id' => 'HOM05D000572', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000572' ), 'data_identifier' => 'HOM05D000572', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000572', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '968', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12900' => 'bna', 'A02p35150' => 'bna', 'A03p27530' => 'bna', 'A04p15810' => 'bna', 'A04p17510' => 'bna', 'A06p36740' => 'bna', 'A06p38240' => 'bna', 'A06p41450' => 'bna', 'A07p20570' => 'bna', 'A08p10000' => 'bna', 'A09p57170' => 'bna', 'Aa31LG11G10300' => 'aar', 'Aa31LG11G8250' => 'aar', 'Aa31LG1G13600' => 'aar', 'Aa31LG2G5460' => 'aar', 'Aa31LG3G6840' => 'aar', 'Aa31LG4G9950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2587' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3590' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2421' => 'aag', 'Actinidia00154' => 'ach', 'Actinidia01630' => 'ach', 'Actinidia01631' => 'ach', 'Actinidia05915' => 'ach', 'Actinidia07328' => 'ach', 'Actinidia07329' => 'ach', 'Actinidia08504' => 'ach', 'Actinidia19530' => 'ach', 'Actinidia19531' => 'ach', 'Actinidia19532' => 'ach', 'Actinidia26191' => 'ach', 'Actinidia36192' => 'ach', 'Actinidia36979' => 'ach', 'Ah.01g020670' => 'amhyb', 'Ah.02g118030' => 'amhyb', 'Ah.03g136980' => 'amhyb', 'Ah.04g152120' => 'amhyb', 'Ah.05g176370' => 'amhyb', 'Ah.09g224310' => 'amhyb', 'Ah.10g030120' => 'amhyb', 'Ah.11g046700' => 'amhyb', 'Ah.13g073920' => 'amhyb', 'Ah.14g079260' => 'amhyb', 'Ah.14g080800' => 'amhyb', 'Ah.14g080810' => 'amhyb', 'AL5G16280' => 'aly', 'AL5G16292' => 'aly', 'AL6G38250' => 'aly', 'AL7G42270' => 'aly', 'AL7G42360' => 'aly', 'AL7G42980' => 'aly', 'AL7G43780' => 'aly', 'AL7G48680' => 'aly', 'AL8G22690' => 'aly', 'AL8G23830' => 'aly', 'AL8G23960' => 'aly', 'Aqoxy1G02545' => 'aox', 'Aqoxy2G03356' => 'aox', 'Aqoxy5G03413' => 'aox', 'Aqoxy7G02437' => 'aox', 'Aqoxy7G02578' => 'aox', 'Aqoxy7G03575' => 'aox', 'Aqoxy7G03579' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1YV20X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5512QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65QXJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Z9HW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4439I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A82XLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F09UNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4UJXV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HENQ4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGFM2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0VWWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKU0Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNH8ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKU1UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SGT6TA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM0YXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V66FSB' => 'arhy', 'AT3G27170' => 'ath', 'AT4G08990' => 'ath', 'AT4G13610' => 'ath', 'AT4G14140' => 'ath', 'AT5G26240' => 'ath', 'AT5G33280' => 'ath', 'AT5G40890' => 'ath', 'AT5G49160' => 'ath', 'AT5G49890' => 'ath', 'ATR0332G025' => 'atr', 'ATR0561G026' => 'atr', 'ATR0561G063' => 'atr', 'ATR0584G123' => 'atr', 'ATR0767G024' => 'atr', 'ATR0820G078' => 'atr', 'ATR0820G164' => 'atr', 'ATR1089G119' => 'atr', 'ATR1159G013' => 'atr', 'Atru.chr1.1803' => 'acertr', 'Atru.chr12.1878' => 'acertr', 'Atru.chr4.18' => 'acertr', 'Atru.chr4.2505' => 'acertr', 'Atru.chr6.2547' => 'acertr', 'Atru.chr6.2555' => 'acertr', 'Atru.chr6.334' => 'acertr', 'Atru.chr6.336' => 'acertr', 'Atru.chr6.338' => 'acertr', 'Atru.chr6.341' => 'acertr', 'Atru.chr6.350' => 'acertr', 'Atru.chr7.1966' => 'acertr', 'AUR62000574' => 'cqu', 'AUR62001559' => 'cqu', 'AUR62001560' => 'cqu', 'AUR62001561' => 'cqu', 'AUR62006928' => 'cqu', 'AUR62009504' => 'cqu', 'AUR62011196' => 'cqu', 'AUR62013292' => 'cqu', 'AUR62020707' => 'cqu', 'AUR62021310' => 'cqu', 'AUR62028016' => 'cqu', 'AUR62028017' => 'cqu', 'AUR62031747' => 'cqu', 'AUR62032632' => 'cqu', 'AUR62034781' => 'cqu', 'AUR62038633' => 'cqu', 'AUR62043444' => 'cqu', 'AUR62044510' => 'cqu', 'AUR62044511' => 'cqu', 'BcaB02g07923' => 'bca', 'BcaB04g18073' => 'bca', 'BcaB05g24064' => 'bca', 'BcaB06g27760' => 'bca', 'BcaB06g27851' => 'bca', 'BcaB07g30184' => 'bca', 'BcaB08g35361' => 'bca', 'BcaC01g04847' => 'bca', 'BcaC02g08585' => 'bca', 'BcaC02g08815' => 'bca', 'BcaC03g14662' => 'bca', 'BcaC03g17430' => 'bca', 'BcaC06g30720' => 'bca', 'BcaC06g31014' => 'bca', 'BcaC06g31015' => 'bca', 'BcaC06g33852' => 'bca', 'BcaC07g37691' => 'bca', 'BcaC07g41015' => 'bca', 'BcaC08g44494' => 'bca', 'BcaNung02813' => 'bca', 'BcaNung03971' => 'bca', 'BcaNung05957' => 'bca', 'BolC2t08239H' => 'bol', 'BolC2t11447H' => 'bol', 'BolC2t11948H' => 'bol', 'BolC3t15645H' => 'bol', 'BolC4t26615H' => 'bol', 'BolC4t26803H' => 'bol', 'BolC6t37141H' => 'bol', 'BolC7t44135H' => 'bol', 'BolC7t44532H' => 'bol', 'BolC7t44710H' => 'bol', 'BolC8t48061H' => 'bol', 'BolC8t51587H' => 'bol', 'BraA02t06344Z' => 'bra', 'BraA02t08522Z' => 'bra', 'BraA03t11966Z' => 'bra', 'BraA04t17374Z' => 'bra', 'BraA06t26596Z' => 'bra', 'BraA06t26739Z' => 'bra', 'BraA06t27071Z' => 'bra', 'BraA07t29747Z' => 'bra', 'BraA08t32994Z' => 'bra', 'BraA09t41110Z' => 'bra', 'C02p20960' => 'bna', 'C02p53790' => 'bna', 'C02p58920' => 'bna', 'C03p33230' => 'bna', 'C04p50150' => 'bna', 'C04p52290' => 'bna', 'C06p19460' => 'bna', 'C07p36190' => 'bna', 'C07p39990' => 'bna', 'C07p41790' => 'bna', 'C08p40170' => 'bna', 'CAN.G107.44' => 'can', 'CAN.G1330.38' => 'can', 'CAN.G1491.3' => 'can', 'CAN.G337.82' => 'can', 'CAN.G36.14' => 'can', 'CAN.G44.10' => 'can', 'CAN.G473.91' => 'can', 'CAN.G48.29' => 'can', 'CAN.G855.43' => 'can', 'CAN.G868.5' => 'can', 'CAN.G907.24' => 'can', 'CAN.G969.3' => 'can', 'CANSAT01G1917' => 'cansat', 'CANSAT11G2640' => 'cansat', 'CANSAT56G1955' => 'cansat', 'CANSAT64G0986' => 'cansat', 'CANSAT64G1898' => 'cansat', 'CANSAT78G1323' => 'cansat', 'CARHR058400' => 'chi', 'CARHR058410' => 'chi', 'CARHR059030' => 'chi', 'CARHR070500' => 'chi', 'CARHR070510' => 'chi', 'CARHR116690' => 'chi', 'CARHR148370' => 'chi', 'CARHR182500' => 'chi', 'CARHR182510' => 'chi', 'CARHR185430' => 'chi', 'CARHR185440' => 'chi', 'CARHR185450' => 'chi', 'CARHR187130' => 'chi', 'CARHR213540' => 'chi', 'CARHR258840' => 'chi', 'CARHR286860' => 'chi', 'CARHR287790' => 'chi', 'CARHR287800' => 'chi', 'CARHR287820' => 'chi', 'CARHR293620' => 'chi', 'Carub.0004s0387' => 'cru', 'Carub.0005s0540' => 'cru', 'Carub.0006s2406' => 'cru', 'Carub.0007s2893' => 'cru', 'Carub.0007s3072' => 'cru', 'Carub.0007s3461' => 'cru', 'Carub.0008s0898' => 'cru', 'Carub.0008s0975' => 'cru', 'Ca_00026_v3' => 'car', 'Ca_01148_v3' => 'car', 'Ca_03349_v3' => 'car', 'Ca_03350_v3' => 'car', 'Ca_03370_v3' => 'car', 'Ca_04146_v3' => 'car', 'Ca_11802_v3' => 'car', 'Ca_13535_v3' => 'car', 'Ca_14415_v3' => 'car', 'Ca_21660_v3' => 'car', 'Ca_24388_v3' => 'car', 'Ca_27258_v3' => 'car', 'Ca_28418_v3' => 'car', 'Ca_29045_v3' => 'car', 'CBR_g34307' => 'cbr', 'CBR_g3563' => 'cbr', 'CBR_g3566' => 'cbr', 'Cc02_g23490' => 'ccan', 'Cc02_g23510' => 'ccan', 'Cc03_g03520' => 'ccan', 'Cc06_g07870' => 'ccan', 'Cc07_g00730' => 'ccan', 'Cc07_g19880' => 'ccan', 'CDE01G0045' => 'cde', 'CDE01G0823' => 'cde', 'CDE02G2729' => 'cde', 'CDE02G3338' => 'cde', 'CDE05G0240' => 'cde', 'CDE05G0989' => 'cde', 'CDE05G1047' => 'cde', 'CDE05G1464' => 'cde', 'CDE05G1632' => 'cde', 'CDE05G3220' => 'cde', 'CDE12G0358' => 'cde', 'CDE12G0633' => 'cde', 'Cfa002296' => 'cfa', 'Cfa004451' => 'cfa', 'Cfa004454' => 'cfa', 'Cfa007239' => 'cfa', 'Cfa015621' => 'cfa', 'Cfa020943' => 'cfa', 'Cfa023605' => 'cfa', 'Cfa024779' => 'cfa', 'Cfa026960' => 'cfa', 'Ciclev10000336m.g' => 'ccl', 'Ciclev10003166m.g' => 'ccl', 'Ciclev10003543m.g' => 'ccl', 'Ciclev10004375m.g' => 'ccl', 'Ciclev10007502m.g' => 'ccl', 'Ciclev10014341m.g' => 'ccl', 'Ciclev10027585m.g' => 'ccl', 'CiPaw.01G164100' => 'cil', 'CiPaw.02G095700' => 'cil', 'CiPaw.03G054400' => 'cil', 'CiPaw.03G249800' => 'cil', 'CiPaw.04G176200' => 'cil', 'CiPaw.05G002100' => 'cil', 'CiPaw.12G053900' => 'cil', 'CiPaw.15G186300' => 'cil', 'ClCG06G006050' => 'cla', 'ClCG10G007370' => 'cla', 'ClCG11G000400' => 'cla', 'ClCG11G003360' => 'cla', 'ClCG11G007060' => 'cla', 'COL.COLO4_06192' => 'col', 'COL.COLO4_12138' => 'col', 'COL.COLO4_12145' => 'col', 'COL.COLO4_15565' => 'col', 'COL.COLO4_17187' => 'col', 'Cpa.g.c29844' => 'cpa', 'Cpa.g.c35855' => 'cpa', 'Cpa.g.sc171.26' => 'cpa', 'Cpa.g.sc248.2' => 'cpa', 'Cpa.g.sc37.192' => 'cpa', 'Cpa.g.sc46.55' => 'cpa', 'Cpa.g.sc508.1' => 'cpa', 'Cpa.g.sc58.132' => 'cpa', 'Cre01.g038700' => 'cre', 'Cre06.g249350' => 'cre', 'Cre06.g249500' => 'cre', 'Cre09.g402051' => 'cre', 'Cre09.g404100' => 'cre', 'Cre10.g461750' => 'cre', 'Cre13.g574000' => 'cre', 'Cre17.g729450' => 'cre', 'CsaV3_2G003210' => 'csa', 'CsaV3_2G034160' => 'csa', 'CsaV3_3G006610' => 'csa', 'CsaV3_5G013990' => 'csa', 'CsaV3_6G038240' => 'csa', 'CSS0000634' => 'camsi', 'CSS0009303' => 'camsi', 'CSS0010612' => 'camsi', 'CSS0013420' => 'camsi', 'CSS0015082' => 'camsi', 'CSS0016257' => 'camsi', 'CSS0018001' => 'camsi', 'CSS0019996' => 'camsi', 'CSS0020233' => 'camsi', 'CSS0020456' => 'camsi', 'CSS0024410' => 'camsi', 'CSS0032893' => 'camsi', 'CSS0034253' => 'camsi', 'CSS0034408' => 'camsi', 'CSS0034613' => 'camsi', 'CSS0036208' => 'camsi', 'CSS0036904' => 'camsi', 'CSS0037434' => 'camsi', 'CSS0040103' => 'camsi', 'CSS0040887' => 'camsi', 'CSS0041716' => 'camsi', 'CSS0041833' => 'camsi', 'CSS0041848' => 'camsi', 'CSS0042457' => 'camsi', 'CSS0045013' => 'camsi', 'CSS0046519' => 'camsi', 'CSS0049341' => 'camsi', 'DCAR_001715' => 'dca', 'DCAR_002950' => 'dca', 'DCAR_003283' => 'dca', 'DCAR_009626' => 'dca', 'DCAR_017112' => 'dca', 'DCAR_017774' => 'dca', 'DCAR_019941' => 'dca', 'DCAR_021657' => 'dca', 'DCAR_021783' => 'dca', 'DCAR_022280' => 'dca', 'DCAR_022618' => 'dca', 'DCAR_027188' => 'dca', 'DCAR_030658' => 'dca', 'Dinv19128' => 'din', 'Dinv29624' => 'din', 'Dinv29626' => 'din', 'Dinv29671' => 'din', 'Dinv29674' => 'din', 'Dinv36466' => 'din', 'Dinv36467' => 'din', 'Dinv36469' => 'din', 'Dinv38429' => 'din', 'Dinv41462' => 'din', 'Dinv44509' => 'din', 'Duzib147G0313' => 'dzi', 'Duzib151G0489' => 'dzi', 'Duzib160G0412' => 'dzi', 'Duzib168G1859' => 'dzi', 'Duzib187G1356' => 'dzi', 'Duzib192G1029' => 'dzi', 'Duzib212G0457' => 'dzi', 'Duzib264G0806' => 'dzi', 'ECA232G1355' => 'eca', 'ECA236G0624' => 'eca', 'ECA236G1954' => 'eca', 'ECA238G0600' => 'eca', 'ECA240G0830' => 'eca', 'ECA240G1516' => 'eca', 'EL10Ac2g02771' => 'bvu', 'EL10Ac3g06440' => 'bvu', 'EL10Ac4g09703' => 'bvu', 'EL10Ac5g11326' => 'bvu', 'EL10Ac6g14007' => 'bvu', 'EL10Ac8g18295' => 'bvu', 'EL10Ac8g18751' => 'bvu', 'EL10Ac9g22421' => 'bvu', 'Eucgr.C04333' => 'egr', 'Eucgr.C04346' => 'egr', 'Eucgr.C04362' => 'egr', 'Eucgr.C04368' => 'egr', 'Eucgr.C04370' => 'egr', 'Eucgr.C04372' => 'egr', 'Eucgr.E03522' => 'egr', 'Eucgr.F01498' => 'egr', 'Eucgr.H03545' => 'egr', 'Eucgr.H05062' => 'egr', 'Eucgr.I00036' => 'egr', 'Eucgr.I00087' => 'egr', 'Eucgr.I01654' => 'egr', 'Eucgr.I02790' => 'egr', 'FAN02G3459' => 'fan', 'FAN05G1524' => 'fan', 'FAN05G4279' => 'fan', 'FAN07G2506' => 'fan', 'FAN09G0067' => 'fan', 'FAN11G2057' => 'fan', 'FAN12G4122' => 'fan', 'FAN14G5678' => 'fan', 'FAN17G2497' => 'fan', 'FAN19G0478' => 'fan', 'FAN19G1502' => 'fan', 'FAN19G2024' => 'fan', 'FAN19G2086' => 'fan', 'FAN21G2448' => 'fan', 'FAN22G0242' => 'fan', 'FAN23G0327' => 'fan', 'FAN23G0900' => 'fan', 'FAN23G1020' => 'fan', 'FAN23G2732' => 'fan', 'FAN26G0714' => 'fan', 'FAN26G0750' => 'fan', 'FAN26G0874' => 'fan', 'FAN27G1198' => 'fan', 'FAN28G1896' => 'fan', 'FAN28G2587' => 'fan', 'FvH4_1g02460' => 'fve', 'FvH4_1g10300' => 'fve', 'FvH4_1g25850' => 'fve', 'FvH4_1g28410' => 'fve', 'FvH4_4g00590' => 'fve', 'FvH4_4g15130' => 'fve', 'FvH4_6g53240' => 'fve', 'Glyma.01G239000' => 'gma', 'Glyma.04G187600' => 'gma', 'Glyma.05G077100' => 'gma', 'Glyma.06G178200' => 'gma', 'Glyma.09G157900' => 'gma', 'Glyma.11G004600' => 'gma', 'Glyma.13G161800' => 'gma', 'Glyma.16G057600' => 'gma', 'Glyma.16G208400' => 'gma', 'Glyma.17G189751' => 'gma', 'Glyma.19G089800' => 'gma', 'Gohir.A01G023500' => 'ghi', 'Gohir.A04G052025' => 'ghi', 'Gohir.A04G104266' => 'ghi', 'Gohir.A05G013900' => 'ghi', 'Gohir.A05G339200' => 'ghi', 'Gohir.A05G373000' => 'ghi', 'Gohir.A06G053000' => 'ghi', 'Gohir.A07G227500' => 'ghi', 'Gohir.A10G115100' => 'ghi', 'Gohir.A11G058300' => 'ghi', 'Gohir.A12G002100' => 'ghi', 'Gohir.D01G021500' => 'ghi', 'Gohir.D04G042500' => 'ghi', 'Gohir.D04G077700' => 'ghi', 'Gohir.D04G144050' => 'ghi', 'Gohir.D05G015000' => 'ghi', 'Gohir.D06G052000' => 'ghi', 'Gohir.D07G234600' => 'ghi', 'Gohir.D10G151400' => 'ghi', 'Gohir.D11G062600' => 'ghi', 'Gohir.D12G001800' => 'ghi', 'Gorai.001G270200' => 'gra', 'Gorai.002G024000' => 'gra', 'Gorai.007G067500' => 'gra', 'Gorai.008G001200' => 'gra', 'Gorai.008G052700' => 'gra', 'Gorai.009G015100' => 'gra', 'Gorai.010G060300' => 'gra', 'Gorai.011G168600' => 'gra', 'Gorai.012G048000' => 'gra', 'Gorai.012G087500' => 'gra', 'GSVIVG01000262001' => 'vvi', 'GSVIVG01000263001' => 'vvi', 'GSVIVG01000264001' => 'vvi', 'GSVIVG01012828001' => 'vvi', 'GSVIVG01017933001' => 'vvi', 'GSVIVG01022824001' => 'vvi', 'GSVIVG01023152001' => 'vvi', 'GSVIVG01023153001' => 'vvi', 'GSVIVG01023156001' => 'vvi', 'GSVIVG01023370001' => 'vvi', 'GSVIVG01023377001' => 'vvi', 'GSVIVG01023383001' => 'vvi', 'GSVIVG01033108001' => 'vvi', 'HanXRQChr03g0067631' => 'han', 'HanXRQChr04g0120041' => 'han', 'HanXRQChr05g0143881' => 'han', 'HanXRQChr06g0180841' => 'han', 'HanXRQChr06g0181451' => 'han', 'HanXRQChr09g0246231' => 'han', 'HanXRQChr09g0256191' => 'han', 'HanXRQChr09g0267781' => 'han', 'HanXRQChr10g0303141' => 'han', 'HanXRQChr11g0347301' => 'han', 'HanXRQChr12g0366231' => 'han', 'HanXRQChr15g0486961' => 'han', 'HanXRQChr17g0547771' => 'han', 'Haze_00923' => 'cav', 'Haze_10004' => 'cav', 'Haze_14861' => 'cav', 'Haze_19377' => 'cav', 'Haze_25484' => 'cav', 'Hma1.2p1_0052F.1_g029930' => 'hma', 'Hma1.2p1_0343F.1_g130860' => 'hma', 'HPP92_005638' => 'vpl', 'HPP92_005639' => 'vpl', 'HPP92_005642' => 'vpl', 'HPP92_005786' => 'vpl', 'HPP92_005801' => 'vpl', 'HPP92_005802' => 'vpl', 'HPP92_005803' => 'vpl', 'HPP92_009212' => 'vpl', 'HPP92_010002' => 'vpl', 'HPP92_015260' => 'vpl', 'HPP92_020087' => 'vpl', 'HPP92_024872' => 'vpl', 'HPP92_029081' => 'vpl', 'Hund02488' => 'sun', 'Hund07195' => 'sun', 'Hund09295' => 'sun', 'Hund10068' => 'sun', 'Hund15395' => 'sun', 'Hund21773' => 'sun', 'Hund22744' => 'sun', 'Lalb_Chr01g0008641' => 'lal', 'Lalb_Chr01g0008651' => 'lal', 'Lalb_Chr02g0157731' => 'lal', 'Lalb_Chr03g0033391' => 'lal', 'Lalb_Chr09g0319771' => 'lal', 'Lalb_Chr13g0301451' => 'lal', 'Lalb_Chr13g0304451' => 'lal', 'Lj1g0004536' => 'lja', 'Lj1g0013949' => 'lja', 'Lj2A766T19' => 'lonja', 'Lj2g0020412' => 'lja', 'Lj2g0026816' => 'lja', 'Lj3A740G52' => 'lonja', 'Lj3g0025806' => 'lja', 'Lj4C826T4' => 'lonja', 'Lj4g0015865' => 'lja', 'Lj4g0016098' => 'lja', 'Lj5A282T76' => 'lonja', 'Lj5C282T5' => 'lonja', 'Lj5g0006387' => 'lja', 'Lj6g0006023' => 'lja', 'Lj7C436G16' => 'lonja', 'Lj9A281G43' => 'lonja', 'Lju41C52T5' => 'lonja', 'Lsat_1_v5_gn_2_74800' => 'lsa', 'Lsat_1_v5_gn_3_121' => 'lsa', 'Lsat_1_v5_gn_3_136481' => 'lsa', 'Lsat_1_v5_gn_4_185120' => 'lsa', 'Lsat_1_v5_gn_6_42661' => 'lsa', 'Lsat_1_v5_gn_7_65741' => 'lsa', 'Lsat_1_v5_gn_7_75121' => 'lsa', 'Lsat_1_v5_gn_7_77061' => 'lsa', 'Lsat_1_v5_gn_8_61440' => 'lsa', 'Lsat_1_v5_gn_9_121760' => 'lsa', 'Manes.06G045700' => 'mes', 'Manes.10G110100' => 'mes', 'Manes.13G119400' => 'mes', 'Manes.13G155232' => 'mes', 'Manes.14G117200' => 'mes', 'Manes.15G027000' => 'mes', 'Manes.15G159700' => 'mes', 'Manes.17G103800' => 'mes', 'Mapoly0026s0078' => 'mpo', 'Mapoly0038s0027' => 'mpo', 'Mapoly0061s0111' => 'mpo', 'Mapoly0100s0037' => 'mpo', 'MBI03_g20873_MAGBIO' => 'mbi', 'MBI03_g20877_MAGBIO' => 'mbi', 'MBI04_g17678_MAGBIO' => 'mbi', 'MBI04_g17680_MAGBIO' => 'mbi', 'MBI04_g33422_MAGBIO' => 'mbi', 'MBI06_g32158_MAGBIO' => 'mbi', 'MBI07_g15325_MAGBIO' => 'mbi', 'MBI07_g46613_MAGBIO' => 'mbi', 'MBI07_g46614_MAGBIO' => 'mbi', 'MBI08_g05367_MAGBIO' => 'mbi', 'MBI14_g04234_MAGBIO' => 'mbi', 'MBI14_g16400_MAGBIO' => 'mbi', 'MBI14_g16401_MAGBIO' => 'mbi', 'MBI14_g24730_MAGBIO' => 'mbi', 'MBI14_g46929_MAGBIO' => 'mbi', 'MBI14_g47597_MAGBIO' => 'mbi', 'MCO01G688' => 'mco', 'MCO02G438' => 'mco', 'MCO10G149' => 'mco', 'MCO10G352' => 'mco', 'MCO13G252' => 'mco', 'MD00G1030600' => 'mdo', 'MD02G1021600' => 'mdo', 'MD02G1115100' => 'mdo', 'MD08G1247100' => 'mdo', 'MD08G1247200' => 'mdo', 'MD09G1012400' => 'mdo', 'MD13G1188900' => 'mdo', 'MD15G1164600' => 'mdo', 'MD15G1231100' => 'mdo', 'MD16G1189700' => 'mdo', 'MD17G1013000' => 'mdo', 'Medtr1876s0010' => 'mtr', 'Medtr2g005410' => 'mtr', 'Medtr2g046020' => 'mtr', 'Medtr3g026190' => 'mtr', 'Medtr3g026200' => 'mtr', 'Medtr3g026210' => 'mtr', 'Medtr4g115640' => 'mtr', 'Medtr4g134730' => 'mtr', 'Medtr5g005990' => 'mtr', 'Medtr5g009580' => 'mtr', 'Medtr6g023770' => 'mtr', 'Medtr6g065580' => 'mtr', 'Medtr6g065650' => 'mtr', 'Medtr7g029345' => 'mtr', 'MELO3C004469.2' => 'cme', 'MELO3C008196.2' => 'cme', 'MELO3C008197.2' => 'cme', 'MELO3C014487.2' => 'cme', 'MELO3C016475.2' => 'cme', 'MELO3C023297.2' => 'cme', 'MELO3C026448.2' => 'cme', 'MELO3C028655.2' => 'cme', 'MELO3C029513.2' => 'cme', 'MELO3C030005.2' => 'cme', 'MELO3C031904.2' => 'cme', 'MELO3C032435.2' => 'cme', 'MELO3C032949.2' => 'cme', 'MELO3C032994.2' => 'cme', 'Migut.B00729' => 'egut', 'Migut.F00073' => 'egut', 'Migut.K00417' => 'egut', 'Migut.K01459' => 'egut', 'Migut.N00173' => 'egut', 'Migut.N00875' => 'egut', 'MSTRG.20333' => 'ama', 'MSTRG.21845' => 'ama', 'MSTRG.24090' => 'ama', 'MSTRG.27892' => 'ama', 'MSTRG.3081' => 'ama', 'Nitab4.5_0000040g0400' => 'nta', 'Nitab4.5_0000374g0010' => 'nta', 'Nitab4.5_0000795g0040' => 'nta', 'Nitab4.5_0001057g0070' => 'nta', 'Nitab4.5_0001129g0040' => 'nta', 'Nitab4.5_0002240g0080' => 'nta', 'Nitab4.5_0002911g0020' => 'nta', 'Nitab4.5_0003120g0020' => 'nta', 'Nitab4.5_0004345g0030' => 'nta', 'Nitab4.5_0004640g0010' => 'nta', 'Nitab4.5_0005311g0040' => 'nta', 'Nitab4.5_0008386g0010' => 'nta', 'Nn1g02253' => 'nnu', 'Nn2g12140' => 'nnu', 'Nn2g12141' => 'nnu', 'Nn4g22356' => 'nnu', 'Nn4g26268' => 'nnu', 'Nn5g27348' => 'nnu', 'Nn5g27349' => 'nnu', 'Nn5g27359' => 'nnu', 'Oeu000153.1' => 'oeu', 'Oeu000520.1' => 'oeu', 'Oeu008466.1' => 'oeu', 'Oeu008467.1' => 'oeu', 'Oeu011286.2' => 'oeu', 'Oeu011962.2' => 'oeu', 'Oeu032220.1' => 'oeu', 'Oeu034259.1' => 'oeu', 'Oeu034362.1' => 'oeu', 'Oeu043614.1' => 'oeu', 'Oeu046383.1' => 'oeu', 'Oeu055953.3' => 'oeu', 'Oeu058777.1' => 'oeu', 'Oeu063107.2' => 'oeu', 'Os01g0876100' => 'osa', 'Os02g0558100' => 'osa', 'Os03g0695700' => 'osa', 'Os03g0798300' => 'osa', 'Os04g0644800' => 'osa', 'Os07g0182900' => 'osa', 'Os08g0300300' => 'osa', 'Os12g0438600' => 'osa', 'Peaxi162Scf00000g01611' => 'pax', 'Peaxi162Scf00011g00173' => 'pax', 'Peaxi162Scf00088g01023' => 'pax', 'Peaxi162Scf00152g00164' => 'pax', 'Peaxi162Scf00420g00565' => 'pax', 'Peaxi162Scf00437g00326' => 'pax', 'Peaxi162Scf00692g00522' => 'pax', 'Peaxi162Scf00881g00239' => 'pax', 'Peaxi162Scf01053g00039' => 'pax', 'PGR004G2523' => 'pgr', 'PGR042G1343' => 'pgr', 'PGR083G0045' => 'pgr', 'PGR102G1901' => 'pgr', 'PGR102G2293' => 'pgr', 'PGR119G1310' => 'pgr', 'PGR142G0672' => 'pgr', 'PGSC0003DMG400006975' => 'stu', 'PGSC0003DMG400009752' => 'stu', 'PGSC0003DMG400020215' => 'stu', 'PGSC0003DMG400024904' => 'stu', 'PGSC0003DMG400030708' => 'stu', 'PGSC0003DMG400030941' => 'stu', 'Phvul.001G094700' => 'pvu', 'Phvul.002G047000' => 'pvu', 'Phvul.003G170300' => 'pvu', 'Phvul.004G054600' => 'pvu', 'Phvul.004G133200' => 'pvu', 'Phvul.004G133400' => 'pvu', 'Potri.001G331700' => 'ptr', 'Potri.003G001500' => 'ptr', 'Potri.004G134000' => 'ptr', 'Potri.004G228300' => 'ptr', 'Potri.006G064000' => 'ptr', 'Potri.010G090100' => 'ptr', 'Potri.018G124100' => 'ptr', 'Potri.018G138000' => 'ptr', 'Potri.018G138100' => 'ptr', 'Potri.T046100' => 'ptr', 'Potri.T046200' => 'ptr', 'Pp3c10_14060' => 'ppa', 'Pp3c11_20540' => 'ppa', 'Pp3c12_26150' => 'ppa', 'Pp3c23_11120' => 'ppa', 'Pp3c23_5320' => 'ppa', 'Pp3c2_27650' => 'ppa', 'Pp3c9_2830' => 'ppa', 'PRCOL_00001482' => 'pco', 'PRCOL_00002425' => 'pco', 'PRCOL_00004037' => 'pco', 'PRCOL_00004378' => 'pco', 'PRCOL_00004899' => 'pco', 'PRCOL_00005607' => 'pco', 'PRCOL_00007259' => 'pco', 'Prupe.1G156000' => 'ppe', 'Prupe.1G583800' => 'ppe', 'Prupe.3G304600' => 'ppe', 'Prupe.4G288000' => 'ppe', 'Prupe.7G060100' => 'ppe', 'Prupe.7G183100' => 'ppe', 'Prupe.7G250100' => 'ppe', 'Psat0s3408g0040' => 'psa', 'Psat1g114520' => 'psa', 'Psat1g114720' => 'psa', 'Psat1g223200' => 'psa', 'Psat2g046640' => 'psa', 'Psat3g159080' => 'psa', 'Psat3g159120' => 'psa', 'Psat3g164640' => 'psa', 'Psat4g000760' => 'psa', 'Psat4g036080' => 'psa', 'Psat4g163840' => 'psa', 'Psat4g201880' => 'psa', 'Psat4g212280' => 'psa', 'Psat7g224040' => 'psa', 'PSO017G6326' => 'pso', 'PSO063G1885' => 'pso', 'PSO170G4272' => 'pso', 'PSO170G4847' => 'pso', 'PSO210G2968' => 'pso', 'PSO210G4799' => 'pso', 'PSO302G0089' => 'pso', 'PSO447G0024' => 'pso', 'PSO447G0177' => 'pso', 'PSO782G4911' => 'pso', 'QL02p090185' => 'qlo', 'QL02p102499' => 'qlo', 'QL02p103121' => 'qlo', 'QL02p103162' => 'qlo', 'QL06p003211' => 'qlo', 'QL10p035076' => 'qlo', 'QL10p035129' => 'qlo', 'RcHm_v2.0_Chr1g0360351' => 'rch', 'RcHm_v2.0_Chr2g0087431' => 'rch', 'RcHm_v2.0_Chr2g0097141' => 'rch', 'RcHm_v2.0_Chr2g0113541' => 'rch', 'RcHm_v2.0_Chr2g0175391' => 'rch', 'RcHm_v2.0_Chr3g0484991' => 'rch', 'RcHm_v2.0_Chr4g0416741' => 'rch', 'RcHm_v2.0_Chr5g0051581' => 'rch', 'Rhsim01G0060200' => 'rsi', 'Rhsim02G0022800' => 'rsi', 'Rhsim10G0137900' => 'rsi', 'Rhsim11G0118300' => 'rsi', 'Rhsim11G0118500' => 'rsi', 'Sabra01G0173200' => 'sbr', 'Sabra04G0084200' => 'sbr', 'Sabra06G0046800' => 'sbr', 'Sabra10G0053200' => 'sbr', 'Sabra16G0212700' => 'sbr', 'Sabra18G0105900' => 'sbr', 'Sabra19G0000100' => 'sbr', 'SalBow4G1654' => 'sbo', 'SalBow5G2083' => 'sbo', 'SalBow5G5613' => 'sbo', 'SalBow6G4435' => 'sbo', 'SalBow7G2987' => 'sbo', 'Sc02g0000170' => 'sci', 'Sc03g0006600' => 'sci', 'Sc07g0005030' => 'sci', 'Sc16g0009970' => 'sci', 'Sc18g0000250' => 'sci', 'Sc19g0004290' => 'sci', 'Sed0002312' => 'sed', 'Sed0006545' => 'sed', 'Sed0008365' => 'sed', 'Sed0009647' => 'sed', 'Sed0013775' => 'sed', 'Sed0018919' => 'sed', 'Sed0024033' => 'sed', 'SEGI_02363' => 'sgi', 'SEGI_09529' => 'sgi', 'SEGI_11646' => 'sgi', 'SEGI_14326' => 'sgi', 'SEGI_16715' => 'sgi', 'SEGI_20274' => 'sgi', 'SEGI_23442' => 'sgi', 'SEGI_32866' => 'sgi', 'SEGI_35846' => 'sgi', 'SEGI_36703' => 'sgi', 'SEGI_39590' => 'sgi', 'SGA_v2.0_scaffold10G05099' => 'sas', 'SGA_v2.0_scaffold122G33283' => 'sas', 'SGA_v2.0_scaffold166G38359' => 'sas', 'SGA_v2.0_scaffold18G08531' => 'sas', 'SGA_v2.0_scaffold254G45252' => 'sas', 'SGA_v2.0_scaffold463G51980' => 'sas', 'SGA_v2.0_scaffold47G17586' => 'sas', 'SGA_v2.0_scaffold8G04469' => 'sas', 'SHI05188' => 'shi', 'SMO141G0275' => 'smo', 'SMO143G0310' => 'smo', 'SMO174G0101' => 'smo', 'SMO196G0035' => 'smo', 'SMO358G0070' => 'smo', 'SMO358G0691' => 'smo', 'Solyc01g103140.3' => 'sly', 'Solyc02g068080.3' => 'sly', 'Solyc07g007690.4' => 'sly', 'Solyc09g075800.4' => 'sly', 'Solyc10g044470.3' => 'sly', 'Solyc11g030600.3' => 'sly', 'Sopen01g045550' => 'spe', 'Sopen02g017190' => 'spe', 'Sopen02g038700' => 'spe', 'Sopen07g003680' => 'spe', 'Sopen09g030610' => 'spe', 'Sopen10g013030' => 'spe', 'Sopen11g013460' => 'spe', 'Sp2g16280' => 'spa', 'Sp2g19890' => 'spa', 'Sp2g21510' => 'spa', 'Sp4g01970' => 'spa', 'Sp6g11370' => 'spa', 'Sp7g01050' => 'spa', 'Sp7g07410' => 'spa', 'TAR376G0685' => 'tar', 'TAR381G1272' => 'tar', 'TAR525G0001' => 'tar', 'TAR628G0348' => 'tar', 'TAR628G1524' => 'tar', 'TAR629G1205' => 'tar', 'TAR629G2485' => 'tar', 'TAR633G0967' => 'tar', 'TAR636G0187' => 'tar', 'TAR636G1672' => 'tar', 'TAR636G2342' => 'tar', 'TAR636G3515' => 'tar', 'THA.LOC104802763' => 'tha', 'THA.LOC104805330' => 'tha', 'THA.LOC104806671' => 'tha', 'THA.LOC104815301' => 'tha', 'THA.LOC104818777' => 'tha', 'THA.LOC104820805' => 'tha', 'THA.LOC104823726' => 'tha', 'THA.LOC104825616' => 'tha', 'Thecc.01G144700' => 'tca', 'Thecc.01G144800' => 'tca', 'Thecc.04G034500' => 'tca', 'Thecc.04G227900' => 'tca', 'Thecc.06G000700' => 'tca', 'Thecc.09G134500' => 'tca', 'Thhalv10000011m.g' => 'esa', 'Thhalv10003514m.g' => 'esa', 'Thhalv10003643m.g' => 'esa', 'Thhalv10003679m.g' => 'esa', 'Thhalv10003685m.g' => 'esa', 'Thhalv10005683m.g' => 'esa', 'Thhalv10012744m.g' => 'esa', 'Thhalv10027650m.g' => 'esa', 'TPR.G11976' => 'tpr', 'TPR.G12077' => 'tpr', 'TPR.G18980' => 'tpr', 'TPR.G20577' => 'tpr', 'TPR.G2102' => 'tpr', 'TPR.G21195' => 'tpr', 'TPR.G25333' => 'tpr', 'TPR.G25334' => 'tpr', 'TPR.G2797' => 'tpr', 'TPR.G2802' => 'tpr', 'TPR.G28879' => 'tpr', 'TPR.G28938' => 'tpr', 'TPR.G31040' => 'tpr', 'TPR.G31043' => 'tpr', 'TPR.G37023' => 'tpr', 'TPR.G37134' => 'tpr', 'TPR.G37927' => 'tpr', 'TPR.G40583' => 'tpr', 'TPR.G5933' => 'tpr', 'TPR.G7619' => 'tpr', 'TWI09G1185' => 'twi', 'TWI12G0855' => 'twi', 'TWI15G0599' => 'twi', 'TWI23G0064' => 'twi', 'TWI34G1545' => 'twi', 'TWI59G0518' => 'twi', 'TWI63G0302' => 'twi', 'TWI73G0146' => 'twi', 'TWI75G0891' => 'twi', 'unitig_0.g2080' => 'ugi', 'unitig_0.g2081' => 'ugi', 'unitig_22.g6328' => 'ugi', 'unitig_26.g9010' => 'ugi', 'unitig_748.g8202' => 'ugi', 'vmacro01683' => 'vma', 'vmacro01685' => 'vma', 'vmacro07733' => 'vma', 'vmacro12854' => 'vma', 'vmacro15328' => 'vma', 'vmacro19834' => 'vma', 'VMungo0199G0001' => 'vmu', 'VMungo0385G0001' => 'vmu', 'VMungo0464G0463' => 'vmu', 'VMungo0464G0538' => 'vmu', 'VMungo0464G1362' => 'vmu', 'VMungo0464G1539' => 'vmu', 'VMungo0464G1809' => 'vmu', 'VMungo0647G0272' => 'vmu', 'VMungo0647G0537' => 'vmu', 'VMungo0647G2150' => 'vmu', 'VMungo1215G0056' => 'vmu', 'VMungo1215G0909' => 'vmu', 'VMungo1383G2141' => 'vmu', 'VMungo1404G0001' => 'vmu', 'Zm00001eb053800' => 'zma', 'Zm00001eb068640' => 'zma', 'Zm00001eb082120' => 'zma', 'Zm00001eb124000' => 'zma', 'Zm00001eb146040' => 'zma', 'Zm00001eb235240' => 'zma', 'Zm00001eb244120' => 'zma', 'Zm00001eb301620' => 'zma', 'Zm00001eb301630' => 'zma', 'Zm00001eb389440' => 'zma', 'Zm00001eb423070' => 'zma' ) $gf_id = 'HOM05D000572' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000572' ) $data_identifier = 'HOM05D000572' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 12, 'aly' => (int) 11, 'aox' => (int) 7, 'arhy' => (int) 17, 'ath' => (int) 9, 'atr' => (int) 9, 'acertr' => (int) 12, 'cqu' => (int) 19, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 20, 'cru' => (int) 8, 'car' => (int) 14, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 8, 'csa' => (int) 5, 'camsi' => (int) 27, 'dca' => (int) 13, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 14, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 13, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 7, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 14, 'cme' => (int) 14, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 7, 'pco' => (int) 7, 'ppe' => (int) 7, 'psa' => (int) 14, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 20, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423070' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1